Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Aconitate hydratase (756 aa)
Predicted Functional Partners:
Citrate synthase (429 aa)
Isocitrate dehydrogenase (503 aa)
Isocitrate lyase (543 aa)
Isocitrate dehydrogenase (742 aa)
Dihydroorotate oxidase ; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor (339 aa)
Isocitrate lyase (603 aa)
Beta-IPM dehydrogenase ; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (371 aa)
2-oxoisovalerate dehydrogenase, E1 component, alpha and beta subunit (690 aa)
Transketolase (803 aa)
Your Current Organism:
NCBI taxonomy Id: 391587 Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
2-oxoisovalerate dehydrogenase, E1 component, alpha and beta subunit
Beta-IPM dehydrogenase ; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate
Dihydroorotate oxidase ; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor
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Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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For the above enrichment analysis, the following statistical background is assumed: