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nth protein (Kordia algicida) - STRING interaction network
"nth" - DNA-(apurinic or apyrimidinic site) lyase in Kordia algicida
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
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nthDNA-(apurinic or apyrimidinic site) lyase ; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination, leaving a 3’-terminal unsaturated sugar and a product with a terminal 5’-phosphate (222 aa)    
Predicted Functional Partners:
KAOT1_15037
Exodeoxyribonuclease III (253 aa)
 
 
  0.970
KAOT1_07843
Bacterioferritin comigratory protein (153 aa)
   
   
  0.800
KAOT1_17013
Alpha/beta superfamily hydrolase (282 aa)
 
            0.767
KAOT1_19572
DNA polymerase I (943 aa)
   
 
  0.743
KAOT1_21482
DNA polymerase III, epsilon subunit (457 aa)
   
   
  0.685
KAOT1_06512
DNA polymerase III, epsilon subunit (454 aa)
   
   
  0.685
metG
Methionyl-tRNA synthetase ; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (739 aa)
   
   
  0.675
hisB
Histidine biosynthesis bifunctional protein HisB (377 aa)
     
 
  0.625
KAOT1_19597
Cyanophycin synthetase (884 aa)
         
  0.599
mnmA
tRNA-specific 2-thiouridylase MnmA ; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 (395 aa)
 
        0.574
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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