STRINGSTRING
KAOT1_08438 protein (Kordia algicida) - STRING interaction network
"KAOT1_08438" - Tetrapyrrole methylase family protein in Kordia algicida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KAOT1_08438Tetrapyrrole methylase family protein (237 aa)    
Predicted Functional Partners:
KAOT1_08433
Uncharacterized protein (466 aa)
              0.770
dnaA
Chromosomal replication initiator protein DnaA ; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (475 aa)
 
          0.759
KAOT1_08428
Protein tyrosine phosphatase (151 aa)
              0.731
KAOT1_10541
tRNA-uridine isomerase I ; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (250 aa)
 
 
  0.589
KAOT1_05022
Translation factor (207 aa)
 
     
  0.559
ksgA
S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (260 aa)
   
   
  0.556
KAOT1_20787
Ribonuclease HII ; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (198 aa)
 
        0.552
KAOT1_16858
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (386 aa)
 
        0.549
KAOT1_21672
RNA methyltransferase, TrmH family protein (242 aa)
 
   
  0.534
KAOT1_12262
Putative tRNA-rRNA methyltransferase (246 aa)
 
   
  0.531
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
Server load: low (6%) [HD]