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rpmE2 protein (Kordia algicida) - STRING interaction network
"rpmE2" - 50S ribosomal protein L31 type B in Kordia algicida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmE250S ribosomal protein L31 type B (313 aa)    
Predicted Functional Partners:
KAOT1_09024
Maf-like protein KAOT1_09024 (197 aa)
   
        0.910
KAOT1_12612
Octaprenyl-diphosphate synthase (325 aa)
 
 
  0.898
KAOT1_14712
Uncharacterized protein (242 aa)
 
   
  0.894
KAOT1_09009
Uncharacterized protein (251 aa)
              0.892
KAOT1_09014
Uncharacterized protein (176 aa)
              0.882
KAOT1_14262
4-hydroxybenzoate-octaprenyltransferase (304 aa)
   
   
 
0.826
KAOT1_18277
Putative isoprenyl synthetase (324 aa)
 
 
  0.817
KAOT1_13187
B-glycosyltransferase-related protein, glycosyltransferase family 2 protein (375 aa)
   
          0.701
KAOT1_18387
CHU large protein gliding motility-related protein possible adhesin AidA-related (2404 aa)
   
          0.675
KAOT1_22656
Isopentenyl-diphosphate delta-isomerase (174 aa)
       
  0.674
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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