STRINGSTRING
KAOT1_09691 protein (Kordia algicida) - STRING interaction network
"KAOT1_09691" - RNA polymerase sigma factor in Kordia algicida
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KAOT1_09691RNA polymerase sigma factor (184 aa)    
Predicted Functional Partners:
KAOT1_09686
Uncharacterized protein (268 aa)
 
          0.887
KAOT1_09696
Beta-Ig-H3/fasciclin (170 aa)
 
          0.801
KAOT1_12607
Sigma-24, ECF subfamily protein (187 aa)
 
          0.774
KAOT1_05207
Sigma-24, ECF subfamily protein (181 aa)
   
          0.773
KAOT1_09486
RNA polymerase sigma-70 factor (171 aa)
   
          0.768
KAOT1_19972
Putative RNA polymerase ECF-type sigma factor (198 aa)
   
          0.749
KAOT1_13967
RNA polymerase ECF-type sigma factor (163 aa)
   
          0.734
KAOT1_18437
Putative transmembrane sensor/regulatory protein (302 aa)
   
 
  0.732
KAOT1_17963
Possible anti-sigma factor (310 aa)
   
 
  0.732
KAOT1_16838
Possible anti-sigma factor (304 aa)
   
 
  0.732
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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