STRINGSTRING
ligA protein (Kordia algicida) - STRING interaction network
"ligA" - Polydeoxyribonucleotide synthase [NAD(+)] in Kordia algicida
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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ligAPolydeoxyribonucleotide synthase [NAD(+)] ; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA (665 aa)    
Predicted Functional Partners:
KAOT1_09906
Uncharacterized protein (233 aa)
              0.859
KAOT1_09901
Uncharacterized protein (229 aa)
              0.859
KAOT1_11512
ATP dependent DNA ligase (529 aa)
     
 
  0.801
KAOT1_19597
Cyanophycin synthetase (884 aa)
   
 
  0.716
KAOT1_11156
DPS family protein (162 aa)
       
 
  0.695
KAOT1_01539
DNA-binding DPS protein (157 aa)
       
 
  0.695
uvrB
Excinuclease ABC subunit B ; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (662 aa)
 
 
  0.686
KAOT1_05472
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis (473 aa)
     
 
  0.680
leuS
Leucyl-tRNA synthetase (1000 aa)
 
 
  0.680
KAOT1_21272
Adenylate kinase (368 aa)
   
   
  0.673
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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