STRINGSTRING
KAOT1_10096 protein (Kordia algicida) - STRING interaction network
"KAOT1_10096" - Uncharacterized protein in Kordia algicida
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KAOT1_10096Uncharacterized protein (337 aa)    
Predicted Functional Partners:
KAOT1_10106
Peptidyl-prolyl cis-trans isomerase (405 aa)
              0.918
KAOT1_10101
Peptidyl-prolyl cis-trans isomerase (188 aa)
              0.885
ndk
Nucleoside-2-P kinase ; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate (139 aa)
              0.723
rny
Ribonuclease Y ; Endoribonuclease that initiates mRNA decay (523 aa)
 
   
  0.693
KAOT1_17733
Uncharacterized protein (443 aa)
   
          0.633
pnp
Polynucleotide phosphorylase ; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (746 aa)
       
    0.578
nusA
Transcription termination/antitermination protein NusA ; Participates in both transcription termination and antitermination (410 aa)
 
        0.543
KAOT1_08248
Magnesium chelatase, subunit ChlI (492 aa)
   
          0.533
KAOT1_18372
Zinc metalloprotease (444 aa)
 
          0.521
dnaG
DNA primase ; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication (653 aa)
 
          0.512
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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