STRINGSTRING
KAOT1_10226 protein (Kordia algicida) - STRING interaction network
"KAOT1_10226" - Rhomboid family protein in Kordia algicida
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KAOT1_10226Rhomboid family protein (298 aa)    
Predicted Functional Partners:
KAOT1_10221
Rhomboid family protein (254 aa)
 
     
  0.967
KAOT1_10231
Endonuclease/exonuclease/phosphatase family protein (344 aa)
 
     
  0.903
mutL
DNA mismatch repair protein MutL ; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (620 aa)
 
          0.902
KAOT1_10211
Uncharacterized protein (99 aa)
              0.870
KAOT1_08949
Uncharacterized protein (210 aa)
 
          0.658
KAOT1_10201
Ferric uptake regulator protein (147 aa)
 
          0.580
KAOT1_04380
Universal stress protein (275 aa)
   
          0.518
KAOT1_06052
DNA topoisomerase IV subunit A (880 aa)
   
          0.513
rpmH
50S ribosomal protein L34 (391 aa)
   
          0.509
KAOT1_06062
DNA topoisomerase (ATP-hydrolyzing) (618 aa)
   
          0.504
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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