STRINGSTRING
rho protein (Kordia algicida) - STRING interaction network
"rho" - ATP-dependent helicase Rho in Kordia algicida
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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rhoATP-dependent helicase Rho ; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho’s RNA-dependent ATPase activity, and release of the mRNA from the DNA template (575 aa)    
Predicted Functional Partners:
nusG
Transcription termination/antitermination protein NusG ; Participates in transcription elongation, termination and antitermination (183 aa)
   
 
  0.871
KAOT1_09461
30S ribosomal protein S1 (591 aa)
 
   
  0.724
KAOT1_19572
DNA polymerase I (943 aa)
   
   
  0.696
KAOT1_10586
Uncharacterized protein (136 aa)
              0.691
mraY
UDP-MurNAc-pentapeptide phosphotransferase ; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan (410 aa)
 
        0.648
KAOT1_10691
Uncharacterized protein ; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (1015 aa)
 
   
  0.624
rpoB
Transcriptase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1269 aa)
 
 
  0.621
ctc
General stress protein CTC ; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance (199 aa)
 
   
  0.619
clpX
ATP-dependent Clp protease ATP-binding subunit ClpX ; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP (410 aa)
 
 
 
  0.595
secY
Protein translocase subunit SecY ; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently (446 aa)
 
   
  0.581
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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