STRINGSTRING
rimO protein (Kordia algicida) - STRING interaction network
"rimO" - Ribosome maturation factor RimO in Kordia algicida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimORibosome maturation factor RimO ; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 (435 aa)    
Predicted Functional Partners:
KAOT1_10931
Bifunctional GMP synthase/glutamine amidotransferase protein (363 aa)
              0.652
KAOT1_10691
Uncharacterized protein ; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (1015 aa)
 
   
  0.630
pnp
Polynucleotide phosphorylase ; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (746 aa)
 
        0.618
KAOT1_10906
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (511 aa)
   
        0.568
hemE
Uroporphyrinogen decarboxylase ; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (340 aa)
     
 
  0.563
KAOT1_07548
Inosine-5’-monophosphate dehydrogenase (491 aa)
   
        0.545
KAOT1_11747
Chaperone protein DnaK (Heat-shock protein Hsp70) (496 aa)
   
 
  0.524
KAOT1_03537
Heat shock protein 70 ; Acts as a chaperone (637 aa)
   
 
  0.524
dapF
Diaminopimelate epimerase ; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (269 aa)
 
        0.521
dnaJ
Chaperone protein DnaJ ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] (379 aa)
   
      0.515
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
Server load: low (13%) [HD]