Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
Proteins whose genes are observed to be correlated in expression, across a large number of experiments.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
TPR-repeat-containing protein (607 aa)
Predicted Functional Partners:
Receiver component of a two-component response regulator (221 aa)
Peptidase S8 and S53, subtilisin, kexin, sedolisin (504 aa)
Uncharacterized protein (308 aa)
Uncharacterized protein (64 aa)
CHU large protein uncharacterized (608 aa)
Receiver component of a two-component response regulator (216 aa)
Uncharacterized protein (717 aa)
Uncharacterized protein (488 aa)
Uncharacterized protein (110 aa)
CHU large protein endoglucanase-related protein, glucosyl hydrolase family 9 protein (242 aa)
Your Current Organism:
NCBI taxonomy Id: 391587 Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1