STRINGSTRING
KAOT1_11802 protein (Kordia algicida) - STRING interaction network
"KAOT1_11802" - Possible anti-sigma factor in Kordia algicida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KAOT1_11802Possible anti-sigma factor (298 aa)    
Predicted Functional Partners:
KAOT1_11797
Putative outer membrane protein probably involved in nutrient binding (768 aa)
 
          0.972
KAOT1_11807
Putative RNA polymerase ECF-type sigma factor (171 aa)
 
 
  0.963
KAOT1_18442
Putative RNA polymerase ECF-type sigma factor (169 aa)
 
 
  0.937
KAOT1_17958
Putative RNA polymerase sigma factor (171 aa)
 
 
  0.928
KAOT1_16833
Putative RNA polymerase ECF-type sigma factor (170 aa)
 
 
  0.928
KAOT1_11812
Uncharacterized protein (663 aa)
 
          0.826
KAOT1_17968
Putative outer membrane protein probably involved in nutrient binding (847 aa)
 
          0.807
KAOT1_16843
Putative outer membrane protein probably involved in nutrient binding (845 aa)
 
          0.744
KAOT1_22196
RNA polymerase sigma-24 factor (185 aa)
   
 
  0.732
KAOT1_21177
Possible ECF-family RNA polymerase sigma factor (184 aa)
   
 
  0.732
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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