STRINGSTRING
KAOT1_12262 protein (Kordia algicida) - STRING interaction network
"KAOT1_12262" - Putative tRNA:rRNA methyltransferase in Kordia algicida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KAOT1_12262Putative tRNA-rRNA methyltransferase (246 aa)    
Predicted Functional Partners:
rnr
Ribonuclease R ; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (731 aa)
 
    0.767
KAOT1_12257
Uncharacterized protein (281 aa)
              0.653
KAOT1_12252
Uncharacterized protein (278 aa)
              0.635
KAOT1_03477
Uncharacterized protein (470 aa)
   
 
  0.613
KAOT1_16008
Phenylalanyl-tRNA synthetase alpha subunit (339 aa)
 
 
  0.610
KAOT1_12247
Uncharacterized protein (474 aa)
              0.593
KAOT1_12242
Putative outer membrane protein, probably involved in nutrient binding (1038 aa)
              0.581
rpsR
30S ribosomal protein S18 ; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (98 aa)
   
      0.569
rplA
50S ribosomal protein L1 ; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (230 aa)
   
 
  0.569
KAOT1_06842
50S ribosomal protein L20 ; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (114 aa)
   
 
  0.568
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
Server load: low (8%) [HD]