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KAOT1_12607 protein (Kordia algicida) - STRING interaction network
"KAOT1_12607" - Sigma-24, ECF subfamily protein in Kordia algicida
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KAOT1_12607Sigma-24, ECF subfamily protein (187 aa)    
Predicted Functional Partners:
KAOT1_12602
Uncharacterized protein (262 aa)
              0.859
KAOT1_12597
Uncharacterized protein (352 aa)
 
          0.818
KAOT1_22196
RNA polymerase sigma-24 factor (185 aa)
   
          0.777
KAOT1_09691
RNA polymerase sigma factor (184 aa)
 
          0.774
KAOT1_13967
RNA polymerase ECF-type sigma factor (163 aa)
   
          0.761
KAOT1_15408
RNA polymerase sigma-70 factor, ECF subfamily protein (198 aa)
   
          0.755
KAOT1_07858
RNA polymerase sigma factor/ECF subfamily (Sigma-70) (193 aa)
   
          0.748
KAOT1_03057
RNA polymerase, sigma-E factor heat shock and oxidative stress (176 aa)
   
          0.735
KAOT1_01669
RNA polymerase ECF-type sigma factor (164 aa)
   
          0.734
KAOT1_18437
Putative transmembrane sensor/regulatory protein (302 aa)
   
 
  0.732
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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