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trmB protein (Kordia algicida) - STRING interaction network
"trmB" - tRNA(m7G46)-methyltransferase in Kordia algicida
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmBtRNA(m7G46)-methyltransferase ; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (224 aa)    
Predicted Functional Partners:
KAOT1_14477
Probable methylated DNA-protein cysteine methyltransferase (111 aa)
   
        0.888
KAOT1_14472
Uncharacterized protein (215 aa)
              0.885
KAOT1_14462
Uncharacterized protein (346 aa)
              0.662
KAOT1_22231
Aspartate aminotransferase (141 aa)
   
          0.598
KAOT1_03492
Guanosine 5’-monophosphate oxidoreductase (231 aa)
 
   
  0.567
KAOT1_18137
Uncharacterized protein (189 aa)
   
          0.566
KAOT1_13057
3-deoxy-D-manno-octulosonic-acid transferase, putative (392 aa)
            0.564
KAOT1_22341
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (346 aa)
 
   
  0.556
KAOT1_05127
tRNA modification GTPase TrmE (317 aa)
     
      0.548
KAOT1_08879
Putative sun protein (404 aa)
   
 
  0.543
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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