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truB protein (Kordia algicida) - STRING interaction network
"truB" - tRNA-uridine isomerase in Kordia algicida
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
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truBtRNA-uridine isomerase ; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (230 aa)    
Predicted Functional Partners:
KAOT1_09461
30S ribosomal protein S1 (591 aa)
   
 
  0.906
KAOT1_14562
Uncharacterized protein (93 aa)
 
          0.904
uppP
Undecaprenyl pyrophosphate phosphatase ; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin (267 aa)
              0.885
KAOT1_10906
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (511 aa)
     
   
  0.882
KAOT1_18952
Riboflavin biosynthesis protein (310 aa)
 
   
  0.876
KAOT1_10541
tRNA-uridine isomerase I ; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (250 aa)
 
  0.869
infB
Translation initiation factor IF-2 ; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (938 aa)
 
 
  0.851
rplC
50S ribosomal protein L3 ; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (205 aa)
   
 
  0.811
KAOT1_07548
Inosine-5’-monophosphate dehydrogenase (491 aa)
   
 
  0.797
rplJ
50S ribosomal protein L10 ; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (173 aa)
   
 
  0.792
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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