STRINGSTRING
rnr protein (Kordia algicida) - STRING interaction network
"rnr" - Ribonuclease R in Kordia algicida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnrRibonuclease R ; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (731 aa)    
Predicted Functional Partners:
KAOT1_04897
Small protein B ; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to tra [...] (152 aa)
       
  0.887
KAOT1_01265
ABC-type Fe3+-siderophores transport system (263 aa)
     
      0.814
KAOT1_02792
RNA methylase, SpoU family protein (171 aa)
 
    0.768
KAOT1_11677
tRNA nucleotidyltransferase (474 aa)
   
  0.768
KAOT1_12262
Putative tRNA-rRNA methyltransferase (246 aa)
 
    0.767
KAOT1_21482
DNA polymerase III, epsilon subunit (457 aa)
     
  0.743
KAOT1_06512
DNA polymerase III, epsilon subunit (454 aa)
     
  0.743
KAOT1_10171
23S rRNA methyltransferase (268 aa)
 
    0.736
KAOT1_13292
tRNA/rRNA methyltransferase (176 aa)
 
    0.729
KAOT1_14827
Ribonuclease G (515 aa)
     
  0.691
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
Server load: low (11%) [HD]