STRINGSTRING
KAOT1_16878 protein (Kordia algicida) - STRING interaction network
"KAOT1_16878" - Putative RNA binding protein with S1 RNA-binding domain in Kordia algicida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KAOT1_16878Putative RNA binding protein with S1 RNA-binding domain (708 aa)    
Predicted Functional Partners:
nusG
Transcription termination/antitermination protein NusG ; Participates in transcription elongation, termination and antitermination (183 aa)
     
 
  0.770
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1432 aa)
     
 
  0.661
pnp
Polynucleotide phosphorylase ; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (746 aa)
     
 
  0.523
KAOT1_11366
2-dehydro-3-deoxyphosphooctonate aldolase (533 aa)
       
      0.516
KAOT1_03142
UPF0173 metal-dependent hydrolase KAOT1_03142 (225 aa)
       
      0.516
KAOT1_20272
TPR repeat (211 aa)
     
  0.481
KAOT1_17603
Tetratricopeptide repeat family protein (323 aa)
     
  0.481
KAOT1_13347
Tetratricopeptide TPR_2 (627 aa)
     
  0.481
KAOT1_10406
TPR repeat containing protein (466 aa)
     
  0.481
KAOT1_06112
Putative transmembrane protein (665 aa)
     
  0.481
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
Server load: low (11%) [HD]