STRINGSTRING
KAOT1_18442 protein (Kordia algicida) - STRING interaction network
"KAOT1_18442" - Putative RNA polymerase ECF-type sigma factor in Kordia algicida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KAOT1_18442Putative RNA polymerase ECF-type sigma factor (169 aa)    
Predicted Functional Partners:
KAOT1_18437
Putative transmembrane sensor/regulatory protein (302 aa)
 
 
  0.979
KAOT1_17963
Possible anti-sigma factor (310 aa)
 
 
  0.937
KAOT1_11802
Possible anti-sigma factor (298 aa)
 
 
  0.937
KAOT1_16838
Possible anti-sigma factor (304 aa)
 
 
  0.937
KAOT1_18432
Putative outer membrane protein probably involved in nutrient binding (786 aa)
 
          0.763
KAOT1_11797
Putative outer membrane protein probably involved in nutrient binding (768 aa)
 
          0.596
KAOT1_18447
Uncharacterized protein (294 aa)
              0.572
KAOT1_17968
Putative outer membrane protein probably involved in nutrient binding (847 aa)
 
          0.540
KAOT1_11812
Uncharacterized protein (663 aa)
 
          0.518
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1432 aa)
       
 
  0.517
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
Server load: low (11%) [HD]