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KAOT1_19227 protein (Kordia algicida) - STRING interaction network
"KAOT1_19227" - RNA polymerase, sigma-54 factor in Kordia algicida
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KAOT1_19227RNA polymerase, sigma-54 factor (485 aa)    
Predicted Functional Partners:
KAOT1_00725
Two component, sigma54 specific, transcriptional regulator, Fis family protein (445 aa)
 
   
  0.940
KAOT1_11331
Response regulator receiver domain protein (CheY-like) (454 aa)
 
   
  0.940
KAOT1_08604
Response regulatory protein, sigma 54 related (387 aa)
 
   
  0.940
KAOT1_19222
Putative transmembrane protein (201 aa)
              0.885
rpoA
Transcriptase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (330 aa)
     
 
  0.877
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1432 aa)
       
 
  0.856
rpoB
Transcriptase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1269 aa)
       
 
  0.856
KAOT1_19937
Transcriptional regulator, sigma-54-related protein (418 aa)
 
     
  0.807
asnS
Asparaginyl-tRNA synthetase (480 aa)
              0.643
KAOT1_00720
Histidine kinase (359 aa)
   
 
  0.609
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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