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PBAL39_00255 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_00255" - RNA polymerase, sigma-E factor heat shock and oxidative stress in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_00255RNA polymerase, sigma-E factor heat shock and oxidative stress (190 aa)    
Predicted Functional Partners:
PBAL39_00260
RNA polymerase ECF-type sigma factor (177 aa)
 
          0.885
PBAL39_20289
RNA polymerase ECF-type sigma factor (197 aa)
   
          0.760
PBAL39_23452
RNA polymerase ECF-type sigma factor (196 aa)
   
          0.756
PBAL39_19899
Putative RNA polymerase sigma factor (194 aa)
   
          0.756
PBAL39_22917
RNA polymerase ECF-type sigma factor (196 aa)
   
          0.742
PBAL39_16294
RNA polymerase ECF-type sigma factor (202 aa)
   
          0.730
PBAL39_02670
RNA polymerase ECF-type sigma factor (202 aa)
   
          0.712
PBAL39_22225
Uncharacterized protein (182 aa)
 
          0.685
PBAL39_00070
Putative ECF-type RNA polymerase sigma factor (197 aa)
   
          0.684
PBAL39_00702
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (197 aa)
   
          0.670
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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