STRINGSTRING
PBAL39_00260 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_00260" - RNA polymerase ECF-type sigma factor in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_00260RNA polymerase ECF-type sigma factor (177 aa)    
Predicted Functional Partners:
PBAL39_00255
RNA polymerase, sigma-E factor heat shock and oxidative stress (190 aa)
 
          0.885
PBAL39_00265
Putative anti-sigma factor (380 aa)
              0.712
PBAL39_08791
RNA polymerase, sigma-E factor heat shock and oxidative stress (183 aa)
   
          0.662
PBAL39_03479
RNA polymerase ECF-type sigma factor (195 aa)
   
          0.541
PBAL39_00270
Putative TonB-linked outer membrane receptor protein (1103 aa)
              0.533
PBAL39_00280
Probable xanthan lyase (667 aa)
              0.520
PBAL39_00275
Putative outer membrane protein (559 aa)
              0.520
PBAL39_07310
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (183 aa)
   
          0.436
PBAL39_00250
Nuclease inhibitor (149 aa)
              0.431
PBAL39_12383
RNA polymerase ECF-type sigma factor (176 aa)
   
          0.400
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (6%) [HD]