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PBAL39_00280 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_00280" - Probable xanthan lyase in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_00280Probable xanthan lyase (667 aa)    
Predicted Functional Partners:
PBAL39_00275
Putative outer membrane protein (559 aa)
 
          0.919
PBAL39_00270
Putative TonB-linked outer membrane receptor protein (1103 aa)
 
          0.864
PBAL39_02372
Uncharacterized protein (348 aa)
   
          0.774
PBAL39_06326
Probable oxidoreductase (439 aa)
   
          0.742
PBAL39_02402
Probable large, multifunctional secreted protein (679 aa)
 
          0.736
PBAL39_14429
Putative dehydrogenase (461 aa)
   
          0.731
PBAL39_00265
Putative anti-sigma factor (380 aa)
              0.617
PBAL39_06336
Uncharacterized protein (306 aa)
   
          0.608
PBAL39_20515
Uncharacterized protein (702 aa)
   
          0.600
PBAL39_23137
Uncharacterized protein (239 aa)
   
          0.595
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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