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STRINGSTRING
EDM38052.1 protein (Pedobacter sp. BAL39) - STRING interaction network
"EDM38052.1" - Probably involved in nutrient binding in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM38052.1Probably involved in nutrient binding; COG4771 Outer membrane receptor for ferrienterochelin and colicins (1110 aa)    
Predicted Functional Partners:
EDM38053.1
annotation not available (492 aa)
          0.950
EDM35479.1
annotation not available (498 aa)
   
          0.761
EDM36706.1
annotation not available (476 aa)
   
 
      0.751
EDM38071.1
Putative outer membrane protein; Probably involved in nutrient binding (489 aa)
   
          0.710
EDM34344.1
annotation not available (471 aa)
          0.689
EDM34504.1
annotation not available (478 aa)
 
          0.688
EDM34707.1
annotation not available (511 aa)
          0.685
EDM37764.1
Putative outer membrane protein; Probably involved in nutrient binding (453 aa)
   
          0.679
EDM34150.1
annotation not available (466 aa)
   
 
      0.672
EDM33968.1
Uncharacterized protein; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing (502 aa)
 
          0.659
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter sp. BAL39
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