STRINGSTRING
rnz protein (Pedobacter sp. BAL39) - STRING interaction network
"rnz" - tRNase Z in Pedobacter sp. BAL39
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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rnztRNase Z ; Zinc phosphodiesterase, which displays some tRNA 3’- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3’-trailer from precursor tRNA (303 aa)    
Predicted Functional Partners:
PBAL39_00997
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) (128 aa)
              0.899
PBAL39_06901
tRNA nucleotidyltransferase (468 aa)
   
 
  0.859
PBAL39_10541
Ribonuclease G (503 aa)
   
 
  0.852
PBAL39_18414
DNA polymerase III, epsilon subunit (456 aa)
   
  0.814
PBAL39_08856
Nucleoside-triphosphate pyrophosphatase ; Pyrophosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP/dITP to their respective monophosphate derivatives. Might exclude non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions (192 aa)
   
 
    0.726
rnr
Ribonuclease R ; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (709 aa)
     
  0.697
purC
SAICAR synthetase (314 aa)
   
        0.641
rnc
Ribonuclease III ; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (242 aa)
   
 
  0.635
argS
Arginyl-tRNA synthetase (591 aa)
   
        0.634
tsaD
tRNA threonylcarbamoyladenosine biosynthesis protein TsaD ; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction (333 aa)
 
        0.590
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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