STRINGSTRING
PBAL39_01172 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_01172" - ATP-dependent DNA helicase recQ in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_01172ATP-dependent DNA helicase recQ (630 aa)    
Predicted Functional Partners:
PBAL39_12007
DNA polymerase I (937 aa)
   
  0.932
PBAL39_01572
Putative transposon excision protein (631 aa)
 
  0.897
PBAL39_08150
ATP-dependent RNA helicase (620 aa)
 
0.890
recA
Recombinase A ; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (338 aa)
     
  0.867
PBAL39_01672
Putative ATP-dependent DNA helicase (729 aa)
   
   
 
0.860
PBAL39_12483
Possible ATP-dependent RNA helicase (417 aa)
 
  0.858
PBAL39_13662
DNA helicase (747 aa)
   
  0.858
topA
DNA topoisomerase I ; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (855 aa)
   
  0.849
PBAL39_04034
Single-strand DNA specific exonuclease (566 aa)
 
   
  0.753
PBAL39_14739
Possible ATP-dependent RNA helicase (376 aa)
 
0.740
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (6%) [HD]