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rpmI protein (Pedobacter sp. BAL39) - STRING interaction network
"rpmI" - 50S ribosomal protein L35 in Pedobacter sp. BAL39
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmI50S ribosomal protein L35 (66 aa)    
Predicted Functional Partners:
rplT
50S ribosomal protein L20 ; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (114 aa)
   
  0.997
rplM
50S ribosomal protein L13 ; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (147 aa)
   
  0.981
rplJ
50S ribosomal protein L10 ; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (172 aa)
     
  0.980
rplQ
50S ribosomal protein L17 (179 aa)
     
  0.976
rplD
50S ribosomal protein L4 ; Forms part of the polypeptide exit tunnel (209 aa)
     
  0.971
rplC
50S ribosomal protein L3 ; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (205 aa)
     
  0.971
rplV
50S ribosomal protein L22 ; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (104 aa)
     
  0.971
rpmA
50S ribosomal protein L27 (139 aa)
     
  0.971
PBAL39_23852
50S ribosomal protein L28 (67 aa)
   
  0.970
rplU
50S ribosomal protein L21 ; This protein binds to 23S rRNA in the presence of protein L20 (103 aa)
     
  0.970
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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