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PBAL39_01272 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_01272" - RNA polymerase sigma-70 factor, ECF subfamily protein in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_01272RNA polymerase sigma-70 factor, ECF subfamily protein (193 aa)    
Predicted Functional Partners:
PBAL39_01267
Putative anti-sigma factor (320 aa)
 
          0.945
PBAL39_01262
Uncharacterized protein (578 aa)
 
          0.910
PBAL39_01277
Uncharacterized protein (64 aa)
              0.859
PBAL39_01282
Uncharacterized protein (355 aa)
 
          0.754
PBAL39_22110
Putative anti-sigma factor (322 aa)
 
          0.544
PBAL39_01287
Drug resistance transporter, Bcr/CflA family protein (409 aa)
              0.509
PBAL39_24038
RNA polymerase sigma factor/ECF subfamily (Sigma-70) (191 aa)
   
          0.496
PBAL39_06056
Putative anti-sigma factor (341 aa)
 
          0.488
PBAL39_10771
Putative anti-sigma factor (359 aa)
 
          0.471
PBAL39_11897
RNA polymerase, sigma-24 subunit, ECF subfamily protein (150 aa)
   
          0.470
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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