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EDM38275.1 protein (Pedobacter sp. BAL39) - STRING interaction network
"EDM38275.1" - Tetratricopeptide repeat domain protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM38275.1Tetratricopeptide repeat domain protein; COG0457 FOG- TPR repeat (111 aa)    
Predicted Functional Partners:
EDM38709.1
COG2386 ABC-type transport system involved in cytochrome c biogenesis, permease component (244 aa)
   
          0.744
EDM38701.1
Uncharacterized protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH (136 aa)
   
          0.711
EDM38274.1
COG2086 Electron transfer flavoprotein, beta subunit (245 aa)
              0.707
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps (526 aa)
   
   
  0.689
EDM37058.1
annotation not available (189 aa)
   
          0.689
EDM36299.1
annotation not available (213 aa)
   
          0.683
EDM37382.1
COG1239 Mg-chelatase subunit ChlI (496 aa)
   
   
    0.665
EDM38382.1
COG0408 Coproporphyrinogen III oxidase (298 aa)
       
  0.663
EDM38276.1
Chromate transporter, permease component; COG2059 Chromate transport protein ChrA (370 aa)
 
          0.644
EDM38700.1
COG1138 Cytochrome c biogenesis factor (821 aa)
   
          0.633
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter sp. BAL39
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