STRINGSTRING
PBAL39_01882 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_01882" - Transcription antiterminator in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_01882Transcription antiterminator (173 aa)    
Predicted Functional Partners:
PBAL39_01887
UDP-glucose/GDP-mannose dehydrogenase family protein (430 aa)
              0.766
PBAL39_01902
Uncharacterized protein (288 aa)
 
          0.720
PBAL39_01897
DegT/DnrJ/EryC1/StrS aminotransferase (382 aa)
              0.683
PBAL39_01892
Capsular polysaccharide repeat unit transporter (480 aa)
              0.683
PBAL39_01907
Wlac protein (366 aa)
              0.669
PBAL39_01912
Putative DegT/DnrJ/EryC1/StrS family amino sugar synthetase (419 aa)
              0.651
PBAL39_01922
Uncharacterized protein (360 aa)
              0.634
PBAL39_01917
Glycosyltransferase (196 aa)
              0.634
PBAL39_05818
Uncharacterized protein (137 aa)
   
          0.607
PBAL39_17194
Putative outer membrane protein (511 aa)
   
          0.602
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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