STRINGSTRING
PBAL39_02227 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_02227" - Tyrosine recombinase XerC in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_02227Tyrosine recombinase XerC (292 aa)    
Predicted Functional Partners:
aroQ
Type II DHQase ; Catalyzes a trans-dehydration via an enolate intermediate (139 aa)
              0.760
PBAL39_23928
Regulator protein cell division inhibitor (267 aa)
 
   
  0.730
PBAL39_14519
3-dehydroquinate synthase (358 aa)
     
    0.713
PBAL39_09241
3-dehydroquinate synthase (392 aa)
     
    0.690
ruvB
Holliday junction ATP-dependent DNA helicase RuvB ; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing (362 aa)
 
 
  0.654
PBAL39_20625
Cell division protein (883 aa)
   
 
 
  0.636
ruvC
Holliday junction resolvase RuvC ; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5’-terminal phosphate and a 3’-terminal hydroxyl group (187 aa)
 
 
  0.613
PBAL39_06301
Recombination protein N ; May be involved in recombinational repair of damaged DNA (552 aa)
 
 
  0.585
PBAL39_24405
Shikimate 5-dehydrogenase (247 aa)
       
    0.552
ruvA
Holliday junction ATP-dependent DNA helicase RuvA ; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB (194 aa)
 
 
  0.539
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (7%) [HD]