• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
EDM38396.1 protein (Pedobacter sp. BAL39) - STRING interaction network
"EDM38396.1" - Riboflavin biosynthesis protein RibD in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM38396.1Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (332 aa)    
Predicted Functional Partners:
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family (403 aa)
  0.999
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin (163 aa)
 
  0.999
EDM38752.1
COG0307 Riboflavin synthase alpha chain (194 aa)
  0.998
folE
COG0302 GTP cyclohydrolase I (210 aa)
       
  0.939
EDM35882.1
Cytidine/deoxycytidylate deaminase family protein; COG0590 Cytosine/adenosine deaminases (168 aa)
   
 
  0.912
EDM35754.1
COG0285 Folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family (412 aa)
     
 
  0.911
EDM37652.1
HAD-superfamily hydrolase subfamily IA, variant 3; COG1011 Predicted hydrolase (HAD superfamily) (211 aa)
   
 
  0.907
EDM34497.1
Uncharacterized protein; COG1011 Predicted hydrolase (HAD superfamily) (224 aa)
   
 
  0.907
EDM37237.1
Probable haloacid dehalogenase-like hydrolase; COG1011 Predicted hydrolase (HAD superfamily) (230 aa)
   
 
  0.907
EDM38208.1
Putative dehalogenase-hydrolase; COG1011 Predicted hydrolase (HAD superfamily) (231 aa)
   
 
  0.907
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter sp. BAL39
Server load: low (14%) [HD]