STRINGSTRING
PBAL39_02562 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_02562" - DNA helicase in Pedobacter sp. BAL39
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_02562DNA helicase (634 aa)    
Predicted Functional Partners:
PBAL39_12007
DNA polymerase I (937 aa)
   
  0.798
PBAL39_06361
ATP-independent RNA helicase (435 aa)
 
    0.739
rpsO
30S ribosomal protein S15 ; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome (92 aa)
     
    0.721
topA
DNA topoisomerase I ; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (855 aa)
     
  0.685
PBAL39_14794
RNA binding protein (107 aa)
     
    0.684
PBAL39_02317
RNA-binding protein (100 aa)
     
    0.684
PBAL39_01572
Putative transposon excision protein (631 aa)
     
  0.678
PBAL39_23562
Possible ATP-dependent RNA helicase (435 aa)
   
    0.674
PBAL39_21615
Possible ATP-dependent RNA helicase (443 aa)
   
    0.674
PBAL39_14739
Possible ATP-dependent RNA helicase (376 aa)
   
    0.674
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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