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PBAL39_03175 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_03175" - 5'(3')-deoxyribonucleotidase in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_031755’(3’)-deoxyribonucleotidase (183 aa)    
Predicted Functional Partners:
PBAL39_03170
Superfamily II DNA/RNA helicase, SNF2 family protein (1139 aa)
              0.659
PBAL39_03180
Transcriptional Regulator, DeoR family protein (249 aa)
              0.613
PBAL39_22345
Outer membrane efflux protein (457 aa)
   
          0.542
PBAL39_22305
Uncharacterized protein (171 aa)
   
          0.528
PBAL39_04114
Two-component system sensor histidine kinase (445 aa)
   
          0.468
PBAL39_13100
Two-component system sensor histidine kinase (456 aa)
   
          0.409
PBAL39_09391
Uncharacterized protein (270 aa)
   
          0.400
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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