STRINGSTRING
PBAL39_03222 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_03222" - Uncharacterized protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_03222Uncharacterized protein (240 aa)    
Predicted Functional Partners:
PBAL39_03217
Uncharacterized protein (127 aa)
 
          0.967
PBAL39_03227
Uncharacterized protein (153 aa)
 
          0.642
PBAL39_03232
tRNA pseudouridine synthase C (235 aa)
              0.563
PBAL39_03212
Altronate oxidoreductase (494 aa)
              0.550
PBAL39_25320
Cation-transporting ATPase (118 aa)
   
          0.494
uxaC
Uronic isomerase (459 aa)
              0.481
PBAL39_03202
PfkB domain protein (339 aa)
              0.481
PBAL39_03237
Uncharacterized protein (65 aa)
              0.471
PBAL39_07235
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (214 aa)
   
          0.429
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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