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PBAL39_03474 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_03474" - RNA polymerase ECF-type sigma factor in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_03474RNA polymerase ECF-type sigma factor (200 aa)    
Predicted Functional Partners:
PBAL39_03479
RNA polymerase ECF-type sigma factor (195 aa)
 
          0.663
PBAL39_10741
RNA polymerase ECF-type sigma factor (194 aa)
   
          0.601
PBAL39_25615
RNA polymerase ECF-type sigma factor (179 aa)
   
          0.597
PBAL39_03464
TonB-dependent receptor plug domain protein (1056 aa)
 
          0.554
PBAL39_03469
Putative anti-sigma factor (327 aa)
 
          0.522
PBAL39_03484
Putative anti-sigma factor (336 aa)
 
          0.515
PBAL39_17279
Putative RNA polymerase sigma factor (188 aa)
   
          0.460
PBAL39_07880
RNA polymerase ECF-type sigma factor (183 aa)
   
          0.416
PBAL39_03364
Putative ECF-type RNA polymerase sigma factor (196 aa)
   
          0.416
PBAL39_14144
RNA polymerase ECF-type sigma factor (208 aa)
   
          0.402
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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