STRINGSTRING
hemH protein (Pedobacter sp. BAL39) - STRING interaction network
"hemH" - Protoheme ferro-lyase in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemHProtoheme ferro-lyase ; Catalyzes the ferrous insertion into protoporphyrin IX (338 aa)    
Predicted Functional Partners:
PBAL39_23337
Uncharacterized protein (181 aa)
 
 
  0.912
PBAL39_09571
Magnesium chelatase, subunit ChlI (496 aa)
   
 
  0.855
ctaB
Heme O synthase ; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group (292 aa)
     
 
  0.852
PBAL39_22045
Tetracycline resistance protein (408 aa)
 
            0.852
hemE
Uroporphyrinogen decarboxylase ; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (340 aa)
 
   
  0.848
PBAL39_02232
Putative protoporphyrinogen oxidase (288 aa)
       
  0.825
PBAL39_02167
Coproporphyrinogen oxidase (298 aa)
 
   
  0.784
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (258 aa)
              0.620
PBAL39_23367
Delta-aminolevulinic acid dehydratase (306 aa)
 
   
  0.577
PBAL39_03564
Cytochrome c oxidase assembly protein (Isoform 1) (344 aa)
       
  0.550
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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