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PBAL39_03904 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_03904" - tRNA-uridine isomerase I in Pedobacter sp. BAL39
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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PBAL39_03904tRNA-uridine isomerase I ; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (267 aa)    
Predicted Functional Partners:
PBAL39_03899
Beta-N-acetylhexosaminidase (635 aa)
              0.859
truB
tRNA-uridine isomerase ; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (258 aa)
   
  0.836
PBAL39_12433
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (343 aa)
 
   
  0.698
ksgA
S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (260 aa)
 
   
  0.689
PBAL39_09741
Peptide chain release factor 2 ; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA (324 aa)
 
   
  0.665
rpsC
30S ribosomal protein S3 ; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation (281 aa)
 
 
  0.665
PBAL39_08821
Pseudouridine synthase (463 aa)
 
   
  0.664
asd
Aspartate-beta-semialdehyde dehydrogenase ; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate (330 aa)
   
   
  0.657
guaA
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (509 aa)
   
   
  0.643
rpsQ
30S ribosomal protein S17 ; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA (84 aa)
 
   
  0.639
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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