STRINGSTRING
PBAL39_03934 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_03934" - Uncharacterized protein in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_03934Uncharacterized protein (160 aa)    
Predicted Functional Partners:
PBAL39_03929
Uncharacterized protein (383 aa)
 
          0.918
PBAL39_03924
Dipeptide ABC transporter, permease component (351 aa)
              0.851
aroK
Shikimate kinase ; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate (168 aa)
              0.851
PBAL39_13657
Uncharacterized protein (227 aa)
   
          0.765
PBAL39_02207
Uncharacterized protein (237 aa)
   
          0.765
PBAL39_09511
Uroporphyrinogen-III synthase (256 aa)
   
          0.748
PBAL39_06276
DNA-directed RNA polymerase subunit omega ; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (108 aa)
   
          0.720
PBAL39_03939
Putative dihydropteroate synthase (286 aa)
              0.710
PBAL39_19649
Possible phosphoribosylformylglycinamidine cyclo-ligase (393 aa)
   
          0.705
PBAL39_12563
Uncharacterized protein (153 aa)
   
          0.703
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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