STRINGSTRING
PBAL39_04019 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_04019" - YCE I like family protein in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_04019YCE I like family protein (197 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase (aminomethyl-transferring) ; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein (959 aa)
              0.602
PBAL39_04024
Response regulator (135 aa)
              0.536
pdxJ
Pyridoxine 5’-phosphate synthase ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5’-phosphate (PNP) and inorganic phosphate (252 aa)
 
          0.496
PBAL39_25285
CHU large protein uncharacterized (251 aa)
   
          0.495
PBAL39_17574
Uncharacterized protein (231 aa)
   
          0.458
PBAL39_00030
Uncharacterized protein (169 aa)
   
          0.436
PBAL39_04009
Glycine dehydrogenase (193 aa)
              0.408
PBAL39_16004
Uncharacterized protein (248 aa)
   
          0.405
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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