STRINGSTRING
PBAL39_04209 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_04209" - Deoxyribodipyrimidine photolyase in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_04209Deoxyribodipyrimidine photolyase (Photoreactivation) (410 aa)    
Predicted Functional Partners:
PBAL39_04214
Uncharacterized protein (302 aa)
 
   
  0.751
PBAL39_04219
Deoxyribodipyrimidine photolyase-class I (433 aa)
 
       
0.648
PBAL39_25490
Phytoene dehydrogenase (Phytoene desaturase) (500 aa)
 
   
  0.630
PBAL39_22922
Uncharacterized protein (472 aa)
 
      0.625
PBAL39_04204
Probable transcriptional regulator, MerR family protein (263 aa)
 
          0.586
PBAL39_25495
Phytoene synthase (278 aa)
 
   
  0.572
PBAL39_11280
Deoxyribodipyrimidine photolyase (65 aa)
   
          0.558
PBAL39_25035
Inosine-5’-monophosphate dehydrogenase (489 aa)
       
    0.508
PBAL39_11285
Uncharacterized protein (117 aa)
 
   
  0.500
ung
Uracil-DNA glycosylase ; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine (225 aa)
     
 
  0.493
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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