STRINGSTRING
PBAL39_04463 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_04463" - Putative DNA repair protein in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_04463Putative DNA repair protein (190 aa)    
Predicted Functional Partners:
PBAL39_04458
Uncharacterized protein (71 aa)
              0.738
PBAL39_04468
Uncharacterized protein (86 aa)
              0.663
mutL
DNA mismatch repair protein MutL ; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (615 aa)
 
   
  0.651
PBAL39_04453
Uncharacterized protein (74 aa)
              0.606
PBAL39_12007
DNA polymerase I (937 aa)
     
 
  0.544
PBAL39_13642
Putative DNA processing Smf-like protein (365 aa)
   
   
  0.462
PBAL39_24615
Formamidopyrimidine-DNA glycosylase (259 aa)
     
 
  0.458
maf
Maf-like protein maf (189 aa)
     
 
  0.452
PBAL39_10541
Ribonuclease G (503 aa)
     
      0.443
PBAL39_07150
Rod shape-determining protein (340 aa)
     
      0.443
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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