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PBAL39_05068 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_05068" - PAS in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_05068PAS (496 aa)    
Predicted Functional Partners:
PBAL39_05073
Two-component response regulator (143 aa)
 
          0.963
PBAL39_25555
Response regulator (139 aa)
 
  0.927
PBAL39_20024
Chemotaxis response regulator (Methyltransferase) (1616 aa)
 
0.912
PBAL39_25570
Sensor for ctr capsule biosynthesis sensor histidine kinase (815 aa)
 
0.888
PBAL39_05063
Uncharacterized protein (43 aa)
              0.859
PBAL39_06141
Two-component response regulator (227 aa)
  0.857
ribBA
Riboflavin biosynthesis protein RibBA ; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate (403 aa)
     
  0.856
PBAL39_00345
Two-component system sensor histidine kinase/response regulator, hybrid (’one-component system’) (1300 aa)
   
   
0.855
PBAL39_23052
Two-component response regulator (214 aa)
   
  0.838
PBAL39_21870
Response regulator (220 aa)
   
  0.838
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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