STRINGSTRING
PBAL39_05523 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_05523" - Uncharacterized protein in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_05523Uncharacterized protein (66 aa)    
Predicted Functional Partners:
uvrB
Excinuclease ABC subunit B ; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (678 aa)
              0.775
PBAL39_05518
Uncharacterized protein (82 aa)
              0.599
PBAL39_05533
Uncharacterized protein (337 aa)
              0.562
PBAL39_05538
Uracil phosphoribosyltransferase (214 aa)
              0.548
PBAL39_20550
Uncharacterized protein (922 aa)
   
          0.543
PBAL39_05543
Probable haloacid dehalogenase-like hydrolase (230 aa)
              0.523
PBAL39_05548
Uncharacterized protein (172 aa)
              0.492
PBAL39_05513
Uncharacterized protein (818 aa)
              0.440
PBAL39_05553
Probable polysaccharide biosynthesis protein (443 aa)
              0.403
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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