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STRINGSTRING
EDM35729.1 protein (Pedobacter sp. BAL39) - STRING interaction network
"EDM35729.1" - COG0457 FOG: TPR repeat in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM35729.1COG0457 FOG- TPR repeat (208 aa)    
Predicted Functional Partners:
EDM38735.1
Allergen V5/Tpx-1 related protein; COG2340 Uncharacterized protein with SCP/PR1 domains (227 aa)
   
 
      0.776
cysS
annotation not available (287 aa)
   
          0.769
EDM37227.1
annotation not available (326 aa)
   
          0.761
EDM35749.1
COG1629 Outer membrane receptor proteins, mostly Fe transport (566 aa)
   
          0.758
EDM37371.1
annotation not available (331 aa)
   
          0.756
EDM35750.1
annotation not available (571 aa)
   
          0.752
EDM36452.1
annotation not available (237 aa)
   
          0.751
EDM35995.1
Uncharacterized protein; COG0457 FOG- TPR repeat (174 aa)
   
          0.746
EDM36019.1
annotation not available (311 aa)
   
          0.734
EDM34515.1
annotation not available (250 aa)
   
          0.728
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter sp. BAL39
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