STRINGSTRING
PBAL39_06291 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_06291" - Transcriptional repressor, CopY family protein in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_06291Transcriptional repressor, CopY family protein (127 aa)    
Predicted Functional Partners:
PBAL39_06296
Peptidase M56, BlaR1 (641 aa)
 
          0.972
PBAL39_06306
Uncharacterized protein (409 aa)
 
          0.627
PBAL39_06286
Uncharacterized protein (304 aa)
              0.593
PBAL39_06281
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (400 aa)
              0.593
PBAL39_06301
Recombination protein N ; May be involved in recombinational repair of damaged DNA (552 aa)
              0.579
PBAL39_06276
DNA-directed RNA polymerase subunit omega ; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (108 aa)
              0.499
PBAL39_06271
Conserved hypothetical lipoprotein (309 aa)
              0.499
PBAL39_02372
Uncharacterized protein (348 aa)
   
          0.488
PBAL39_06311
Uncharacterized protein (358 aa)
              0.439
PBAL39_11767
Uncharacterized protein (184 aa)
   
          0.419
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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