STRINGSTRING
PBAL39_06646 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_06646" - Putative anti-sigma factor in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_06646Putative anti-sigma factor (377 aa)    
Predicted Functional Partners:
PBAL39_19904
Putative FecR (340 aa)
   
          0.778
PBAL39_01267
Putative anti-sigma factor (320 aa)
   
          0.778
PBAL39_12378
Putative anti sigma factor (349 aa)
   
          0.763
PBAL39_14409
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (207 aa)
   
          0.700
PBAL39_06641
Putative RNA polymerase ECF-type sigma factor (189 aa)
 
          0.697
PBAL39_18799
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (184 aa)
   
          0.652
PBAL39_22907
Putative outer membrane protein (211 aa)
   
          0.643
PBAL39_19449
Putative ECF-type RNA polymerase sigma factor (190 aa)
   
          0.629
PBAL39_14019
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (181 aa)
   
          0.606
PBAL39_06061
Putative ECF-type RNA polymerase (198 aa)
   
          0.562
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (3%) [HD]