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STRINGSTRING
EDM35889.1 protein (Pedobacter sp. BAL39) - STRING interaction network
"EDM35889.1" - annotation not available in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM35889.1annotation not available (218 aa)    
Predicted Functional Partners:
EDM35890.1
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family (307 aa)
              0.881
EDM35887.1
Uncharacterized protein; COG0009 Putative translation factor (SUA5); Belongs to the SUA5 family (188 aa)
 
          0.790
EDM35748.1
Uncharacterized protein; COG0457 FOG- TPR repeat (1005 aa)
   
          0.757
EDM35888.1
COG0617 tRNA nucleotidyltransferase/poly(A) polymerase (468 aa)
              0.755
EDM35753.1
annotation not available (271 aa)
   
          0.743
EDM34515.1
annotation not available (250 aa)
   
          0.732
EDM33921.1
COG0216 Protein chain release factor A (205 aa)
   
          0.714
EDM36452.1
annotation not available (237 aa)
   
          0.713
secA
annotation not available (165 aa)
   
          0.705
EDM34383.1
COG0810 Periplasmic protein TonB, links inner and outer membranes (802 aa)
   
          0.695
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter sp. BAL39
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