STRINGSTRING
rny protein (Pedobacter sp. BAL39) - STRING interaction network
"rny" - Ribonuclease Y in Pedobacter sp. BAL39
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnyRibonuclease Y ; Endoribonuclease that initiates mRNA decay (520 aa)    
Predicted Functional Partners:
PBAL39_10945
Uncharacterized protein (479 aa)
 
          0.759
PBAL39_01027
CinA-like protein (415 aa)
         
  0.670
PBAL39_08731
Uncharacterized protein (336 aa)
 
   
  0.670
PBAL39_07115
Phenylalanyl-tRNA synthetase beta subunit (799 aa)
              0.614
PBAL39_07105
Cell division protein ZapA ; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division (96 aa)
              0.611
PBAL39_07090
Uncharacterized protein (169 aa)
              0.586
PBAL39_01587
Isopentenyl-diphosphate-tRNA isopentenyltransferase ; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) (309 aa)
 
     
  0.570
PBAL39_20625
Cell division protein (883 aa)
 
          0.555
rplE
50S ribosomal protein L5 ; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs (189 aa)
 
   
  0.518
rnz
tRNase Z ; Zinc phosphodiesterase, which displays some tRNA 3’- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3’-trailer from precursor tRNA (303 aa)
   
   
  0.493
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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