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PBAL39_07165 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_07165" - Penicillin-binding protein 2 in Pedobacter sp. BAL39
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_07165Penicillin-binding protein 2 (648 aa)    
Predicted Functional Partners:
PBAL39_07170
Rod shape-determining protein (419 aa)
  0.993
PBAL39_21990
Cell division protein (388 aa)
  0.993
PBAL39_07150
Rod shape-determining protein (340 aa)
 
 
  0.980
PBAL39_07155
Cell shape protein MreC ; Involved in formation and maintenance of cell shape (278 aa)
 
   
  0.967
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase ; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) (373 aa)
 
  0.961
murC
UDP-N-acetylmuramoyl-L-alanine synthetase ; Cell wall formation (451 aa)
 
  0.936
PBAL39_07160
Putative transmembrane protein (171 aa)
 
          0.918
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase ; Cell wall formation (242 aa)
 
  0.914
rplE
50S ribosomal protein L5 ; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs (189 aa)
       
 
  0.897
rplB
50S ribosomal protein L2 ; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome (274 aa)
       
      0.896
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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